source: trunk/CrossPare/src/de/ugoe/cs/cpdp/eval/MySQLResultStorage.java @ 121

Last change on this file since 121 was 121, checked in by sherbold, 8 years ago
  • result storage now considers first classifier in file when checking if a result is available
  • Property svn:mime-type set to text/plain
File size: 6.7 KB
Line 
1// Copyright 2015 Georg-August-Universität Göttingen, Germany
2//
3//   Licensed under the Apache License, Version 2.0 (the "License");
4//   you may not use this file except in compliance with the License.
5//   You may obtain a copy of the License at
6//
7//       http://www.apache.org/licenses/LICENSE-2.0
8//
9//   Unless required by applicable law or agreed to in writing, software
10//   distributed under the License is distributed on an "AS IS" BASIS,
11//   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12//   See the License for the specific language governing permissions and
13//   limitations under the License.
14
15package de.ugoe.cs.cpdp.eval;
16
17import java.io.FileInputStream;
18import java.io.IOException;
19import java.sql.ResultSet;
20import java.sql.SQLException;
21import java.sql.Statement;
22import java.util.Properties;
23
24
25import com.mysql.jdbc.jdbc2.optional.MysqlDataSource;
26
27import de.lmu.ifi.dbs.elki.logging.Logging.Level;
28import de.ugoe.cs.util.console.Console;
29
30/**
31 * <p>
32 * Implements a storage of experiment results in a MySQL database.
33 * </p>
34 *
35 * @author Steffen Herbold
36 */
37public class MySQLResultStorage implements IResultStorage {
38
39    /**
40     * Connection to the database
41     */
42    //private Connection con = null;
43   
44    /**
45     * Connection pool for the data base.
46     */
47    private MysqlDataSource connectionPool = null;
48
49    /**
50     * <p>
51     * Creates a new results storage. Tries to read a properties file mysql.cred located in the
52     * working directory. If this file is not found, the default database configuration is used:
53     * <ul>
54     * <li>dbHost = localhost</li>
55     * <li>dbPort = 3306</li>
56     * <li>dbName = crosspare</li>
57     * <li>dbUser = crosspare</li>
58     * <li>dbPass = benchmark</li>
59     * </p>
60     */
61    public MySQLResultStorage() {
62        Properties dbProperties = new Properties();
63        try {
64            dbProperties.load(new FileInputStream("mysql.cred"));
65        }
66        catch (IOException e) {
67            Console.printerr("Could not load mysql.cred file: " + e.getMessage());
68            Console.printerr("Must be a properties file located in working directory.");
69            Console
70                .traceln(Level.WARNING,
71                         "Using default DB configuration since mysql.cred file could not be loaded");
72        }
73        String dbHost = dbProperties.getProperty("db.host", "localhost");
74        String dbPort = dbProperties.getProperty("db.port", "3306");
75        String dbName = dbProperties.getProperty("db.name", "crosspare");
76        String dbUser = dbProperties.getProperty("db.user", "crosspare");
77        String dbPass = dbProperties.getProperty("db.pass", "benchmark");
78        connectToDB(dbHost, dbPort, dbName, dbUser, dbPass);
79    }
80
81    /**
82     * <p>
83     * Sets up the database connection
84     * </p>
85     *
86     * @param dbHost
87     *            host of the database
88     * @param dbPort
89     *            port of the database
90     * @param dbName
91     *            name of the database
92     * @param dbUser
93     *            user of the database
94     * @param dbPass
95     *            password of the user
96     */
97    private void connectToDB(String dbHost,
98                             String dbPort,
99                             String dbName,
100                             String dbUser,
101                             String dbPass)
102    {
103        connectionPool = new MysqlDataSource();
104        connectionPool.setUser(dbUser);
105        connectionPool.setPassword(dbPass);
106        connectionPool.setUrl("jdbc:mysql://" + dbHost + ":" + dbPort + "/" + dbName);
107    }
108
109    /*
110     * (non-Javadoc)
111     *
112     * @see de.ugoe.cs.cpdp.eval.IResultStorage#addResult(de.ugoe.cs.cpdp.eval.ExperimentResult)
113     */
114    @Override
115    public void addResult(ExperimentResult result) {
116        StringBuilder sql = new StringBuilder();
117        sql.append("INSERT INTO crosspare.results VALUES (NULL,");
118        sql.append("\'" + result.getConfigurationName() + "\',");
119        sql.append("\'" + result.getProductName() + "\',");
120        sql.append("\'" + result.getClassifier() + "\',");
121        sql.append(result.getSizeTestData() + ",");
122        sql.append(result.getSizeTrainingData() + ",");
123        sql.append(result.getSuccHe() + ",");
124        sql.append(result.getSuccZi() + ",");
125        sql.append(result.getSuccG75() + ",");
126        sql.append(result.getSuccG60() + ",");
127        sql.append(result.getError() + ",");
128        sql.append(result.getRecall() + ",");
129        sql.append(result.getPrecision() + ",");
130        sql.append(result.getFscore() + ",");
131        sql.append(result.getGscore() + ",");
132        sql.append(result.getMcc() + ",");
133        sql.append(result.getAuc() + ",");
134        sql.append(result.getAucec() + ",");
135        sql.append(result.getTpr() + ",");
136        sql.append(result.getTnr() + ",");
137        sql.append(result.getFpr() + ",");
138        sql.append(result.getFnr() + ",");
139        sql.append(result.getTp() + ",");
140        sql.append(result.getFn() + ",");
141        sql.append(result.getTn() + ",");
142        sql.append(result.getFp() + ");");
143
144        Statement stmt;
145        try {
146            stmt = connectionPool.getConnection().createStatement();
147            stmt.executeUpdate(sql.toString().replace("NaN", "NULL"));
148        }
149        catch (SQLException e) {
150            Console.printerr("Problem with MySQL connection: ");
151            Console.printerr("SQLException: " + e.getMessage());
152            Console.printerr("SQLState: " + e.getSQLState());
153            Console.printerr("VendorError: " + e.getErrorCode());
154            return;
155        }
156    }
157
158    /*
159     * (non-Javadoc)
160     *
161     * @see de.ugoe.cs.cpdp.eval.IResultStorage#containsResult(java.lang.String, java.lang.String)
162     */
163    @Override
164    public int containsResult(String experimentName, String productName, String classifierName) {
165        String sql = "SELECT COUNT(*) as cnt FROM crosspare.results WHERE configurationName=\'" +
166            experimentName + "\' AND productName=\'" + productName + "\' AND classifier=\'" + classifierName + "\';";
167        Statement stmt;
168        try {
169            stmt = connectionPool.getConnection().createStatement();
170            ResultSet results = stmt.executeQuery(sql);
171            results.next();
172            return results.getInt("cnt");
173        }
174        catch (SQLException e) {
175            Console.printerr("Problem with MySQL connection: \n");
176            Console.printerr("SQLException: " + e.getMessage() + "\n");
177            Console.printerr("SQLState: " + e.getSQLState() + "\n");
178            Console.printerr("VendorError: " + e.getErrorCode() + "\n");
179            return 0;
180        }
181    }
182}
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